Captive tigers in the United States outnumber those living in the wild. The World Wildlife Federation estimates around 5,000 of the big cats reside in the U.S., mostly owned by private citizens.
The health of this population is a genetic mystery for conservation groups and researchers interested in how the captive tigers could help stabilize or restore wild tiger populations. Are the privately owned animals just like tigers in the wild, or do they reflect characteristics popular in the illegal trade? Are they a hodgepodge of wild tiger ancestry, or are they detrimentally inbred?
New research from Stanford University, published Sept. 19 in Proceedings of the National Academy of Sciences, digs into these questions and offers a new tool that conservationists and law enforcement can use to protect the animals and prosecute those responsible for their abuse.
"We're trying to leverage genomic technology to be useful in a conservation context - there are so few tigers. We won't get a second chance if they go extinct," said Ellie Armstrong, PhD '21, who is lead author of the paper.
An unknown population
The study was led by Armstrong, who conducted the research as part of her doctoral studies in biology, with her co-advisors and co-authors Elizabeth Hadly, the Paul S. and Billie Achilles Professor in Environmental Biology, Emerita, and Dmitri Petrov, the Michelle and Kevin Douglas Professor, both in the School of Humanities and Sciences.
The researchers became interested in studying the genetic diversity of privately held tigers - called "generic" because their sources are unknown - after conducting a study on the genetic impact of the isolation of wild tiger populations.
"We were conducting a large study on wild tiger populations and leveraged these data to address the issue of captive tigers in the United States. It was a bit unbelievable, at first, that you could have a tiger living right next door and not know it,'" said Armstrong, who is now an assistant professor of evolution, ecology, and organismal biology at the University of California, Riverside. "We got connected with Tigers in America, and that's when we realized that there's an enormous number of these cats outside of accredited facilities that were bred for animal encounters, performed as circus animals, or were trafficked as exotic pets. But we didn't have any idea what kind of tiger they were or where they came from."
A hurdle for the research team was the absence of official data on generic tigers. Shows like Netflix's 2020 Tiger King and the 2009 documentary The Tiger Next Door helped grow public knowledge of the problem of privately owned tigers, but accessing the animals for research purposes was still a challenge.
"There was so much hearsay associated with this captive population and a lot of it contradicts itself. People said, 'All of the cats are really inbred,' or 'All of the cats are genetically diverse,'" said Armstrong. "We had no idea what to expect and thought that genomic technology could help us answer some of these questions."
Building a genetic database
Through relationships with sanctuaries that had rescued generic tigers, the team obtained samples and learned about the tigers, including the rescue locations for many animals.
The researchers collected samples from 154 generic tigers and used another 100 available wild tiger samples existing in the National Center for Biotechnology Information (NCBI) database. From their previous work, the team knew that there are six wild subspecies of tigers. With these data, they developed a reference panel for tigers that was used to accurately distinguish individual animals and assign their genetic ancestry. Armstrong compares it to the popular genetic ancestry tests for humans.
"When we do 23andMe, we're not sequencing the whole genome - we're sequencing a portion of it that informs us about your health and ancestry," she said. "That's what we want to be able to do, but for tigers. It's difficult and expensive to sequence and analyze a whole genome, especially in a conservation context. The workflow we built allows you to sequence a portion of the genome and get answers about the tiger individual and its ancestry."
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Rescue tiger Kenobi, whose DNA was sequenced as part of this study. Kenobi came to In-Sync Exotics Wildlife Rescue and Educational Center in Wylie, Texas (2018) after being found abandoned in a duffel bag at the Mexican border. Kenobi lives with two other tigers, Anakin and Kylo-Ren, who are fondly referred to as the Jedi Boys. | Dave Smith
