Exploring Climate Links in Oceans' Tiny Organisms

Massachusetts Institute of Technology

Andrew Babbin tries to pack light for work trips. Along with the travel essentials, though, he also brings a roll each of electrical tape, duct tape, lab tape, a pack of cable ties, and some bungee cords.

"It's my MacGyver kit: You never know when you have to rig something on the fly in the field or fix a broken bag," Babbin says.

The trips Babbin takes are far out to sea, on month-long cruises, where he works to sample waters off the Pacific coast and out in the open ocean. In remote locations, repair essentials often come in handy, as when Babbin had to zip-tie a wrench to a sampling device to help it sink through an icy Antarctic lake.

Babbin is an oceanographer and marine biogeochemist who studies marine microbes and the ways in which they control the cycling of nitrogen between the ocean and the atmosphere. This exchange helps maintain healthy ocean ecosystems and supports the ocean's capacity to store carbon.

By combining measurements that he takes in the ocean with experiments in his MIT lab, Babbin is working to understand the connections between microbes and ocean nitrogen, which could in turn help scientists identify ways to maintain the ocean's health and productivity. His work has taken him to many coastal and open-ocean regions around the globe.

"You really become an oceanographer and an Earth scientist to see the world," says Babbin, who recently earned tenure as the Cecil and Ida Green Career Development Professor in MIT's Department of Earth, Atmospheric and Planetary Sciences. "We embrace the diversity of places and cultures on this planet. To see just a small fraction of that is special."

A powerful cycle

The ocean has been a constant presence for Babbin since childhood. His family is from Monmouth County, New Jersey, where he and his twin sister grew up playing along the Jersey shore. When they were teenagers, their parents took the kids on family cruise vacations.

"I always loved being on the water," he says. "My favorite parts of any of those cruises were the days at sea, where you were just in the middle of some ocean basin with water all around you."

In school, Babbin gravitated to the sciences, and chemistry in particular. After high school, he attended Columbia University, where a visit to the school's Earth and environmental engineering department catalyzed a realization.

"For me, it was always this excitement about the water and about chemistry, and it was this pop of, 'Oh wow, it doesn't have to be one or the other,'" Babbin says.

He chose to major in Earth and environmental engineering, with a concentration in water resources and climate risks. After graduating in 2008, Babbin returned to his home state, where he attended Princeton University and set a course for a PhD in geosciences, with a focus on chemical oceanography and environmental microbiology. His advisor, oceanographer Bess Ward, took Babbin on as a member of her research group and invited him on several month-long cruises to various parts of the eastern tropical Pacific.

"I still remember that first trip," Babbin recalls. "It was a whirlwind. Everyone else had been to sea a gazillion times and was loading the boat and strapping things down, and I had no idea of anything. And within a few hours, I was doing an experiment as the ship rocked back and forth!"

Babbin learned to deploy sampling cannisters overboard, then haul them back up and analyze the seawater inside for signs of nitrogen - an essential nutrient for all living things on Earth.

As it turns out, the plants and animals that depend on nitrogen to survive are unable to take it up from the atmosphere themselves. They require a sort of go-between, in the form of microbes that "fix" nitrogen, converting it from nitrogen gas to more digestible forms. In the ocean, this nitrogen fixation is done by highly specialized microbial species, which work to make nitrogen available to phytoplankton - microscopic plant-like organisms that are the foundation of the marine food chain. Phytoplankton are also a main route by which the ocean absorbs carbon dioxide from the atmosphere.

Microorganisms may also use these biologically available forms of nitrogen for energy under certain conditions, returning nitrogen to the atmosphere. These microbes can also release a byproduct of nitrous oxide, which is a potent greenhouse gas that also can catalyze ozone loss in the stratosphere.

Through his graduate work, at sea and in the lab, Babbin became fascinated with the cycling of nitrogen and the role that nitrogen-fixing microbes play in supporting the ocean's ecosystems and the climate overall. A balance of nitrogen inputs and outputs sustains phytoplankton and maintains the ocean's ability to soak up carbon dioxide.

"Some of the really pressing questions in ocean biogeochemistry pertain to this cycling of nitrogen," Babbin says. "Understanding the ways in which this one element cycles through the ocean, and how it is central to ecosystem health and the planet's climate, has been really powerful."

In the lab and out to sea

After completing his PhD in 2014, Babbin arrived at MIT as a postdoc in the Department of Civil and Environmental Engineering.

"My first feeling when I came here was, wow, this really is a nerd's playground," Babbin says. "I embraced being part of a culture where we seek to understand the world better, while also doing the things we really want to do."

In 2017, he accepted a faculty position in MIT's Department of Earth, Atmospheric and Planetary Sciences. He set up his laboratory space, painted in his favorite brilliant orange, on the top floor of the Green Building.

His group uses 3D printers to fabricate microfluidic devices in which they reproduce the conditions of the ocean environment and study microbe metabolism and its effects on marine chemistry. In the field, Babbin has led research expeditions to the Galapagos Islands and parts of the eastern Pacific, where he has collected and analyzed samples of air and water for signs of nitrogen transformations and microbial activity. His new measuring station in the Galapagos is able to infer marine emissions of nitrous oxide across a large swath of the eastern tropical Pacific Ocean. His group has also sailed to southern Cuba, where the researchers studied interactions of microbes in coral reefs.

Most recently, Babbin traveled to Antarctica, where he set up camp next to frozen lakes and plumbed for samples of pristine ice water that he will analyze for genetic remnants of ancient microbes. Such preserved bacterial DNA could help scientists understand how microbes evolved and influenced the Earth's climate over billions of years.

"Microbes are the terraformers," Babbin notes. "They have been, since life evolved more than 3 billion years ago. We have to think about how they shape the natural world and how they will respond to the Anthropocene as humans monkey with the planet ourselves."

Collective action

Babbin is now charting new research directions. In addition to his work at sea and in the lab, he is venturing into engineering, with a new project to design denitrifying capsules. While nitrogen is an essential nutrient for maintaining a marine ecosystem, too much nitrogen, such as from fertilizer that runs off into lakes and streams, can generate blooms of toxic algae. Babbin is looking to design eco-friendly capsules that scrub excess anthropogenic nitrogen from local waterways.

He's also beginning the process of designing a new sensor to measure low-oxygen concentrations in the ocean. As the planet warms, the oceans are losing oxygen, creating "dead zones" where fish cannot survive. While others including Babbin have tried to map these oxygen minimum zones, or OMZs, they have done so sporadically, by dropping sensors into the ocean over limited range, depth, and times. Babbin's sensors could potentially provide a more complete map of OMZs, as they would be deployed on wide-ranging, deep-diving, and naturally propulsive vehicles: sharks.

"We want to measure oxygen. Sharks need oxygen. And if you look at where the sharks don't go, you might have a sense of where the oxygen is not," says Babbin, who is working with marine biologists on ways to tag sharks with oxygen sensors. "A number of these large pelagic fish move up and down the water column frequently, so you can map the depth to which they dive to, and infer something about the behavior. And my suggestion is, you might also infer something about the ocean's chemistry."

When he reflects on what stimulates new ideas and research directions, Babbin credits working with others, in his own group and across MIT.

"My best thoughts come from this collective action," Babbin says. "Particularly because we all have different upbringings and approach things from a different perspective."

He's bringing this collaborative spirit to his new role, as a mission director for MIT's Climate Project. Along with Jesse Kroll, who is a professor of civil and environmental engineering and of chemical engineering, Babbin co-leads one of the project's six missions: Restoring the Atmosphere, Protecting the Land and Oceans. Babbin and Kroll are planning a number of workshops across campus that they hope will generate new connections, and spark new ideas, particularly around ways to evaluate the effectiveness of different climate mitigation strategies and better assess the impacts of climate on society.

"One area we want to promote is thinking of climate science and climate interventions as two sides of the same coin," Babbin says. "There's so much action that's trying to be catalyzed. But we want it to be the best action. Because we really have one shot at doing this. Time is of the essence."

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